PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 289aa    MW: 31381.6 Da    PI: 7.0058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1210genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-101154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+ e d+ + +a + ++ +   +W++Ia+ +  g+tl+++k ++
      Gh_A12G1210 11 EWSREQDKAFENALATYPEDtsyRWEKIAADVR-GKTLEEIKQHY 54
                     7********************************.**********9 PP

2Myb_DNA-binding42.21.9e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
      Gh_A12G1210 122 AWTEDEHRLFLLGLDKYGKGDWRSISRDFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.638762IPR017884SANT domain
SMARTSM007179.5E-9860IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-111066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-41155IPR009057Homeodomain-like
CDDcd001677.78E-91157No hitNo description
PfamPF002491.6E-71154IPR001005SANT/Myb domain
PROSITE profilePS5129417.18114171IPR017930Myb domain
SuperFamilySSF466892.73E-16117172IPR009057Homeodomain-like
SMARTSM007176.4E-10119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.8E-17119169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-10122165IPR009057Homeodomain-like
CDDcd001678.39E-10122167No hitNo description
PfamPF002492.9E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTVHEASNSS EWSREQDKAF ENALATYPED TSYRWEKIAA DVRGKTLEEI KQHYELLEDD  60
VNRIESGCVP LPAYSSSEGS TCHAGDEVTS KKGSDHLGHF NSESDHGSKN SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRDF VVTRTPTQVA SHAQKYFIRL NSINKDRRRS  180
SIHDITSVGN GEILATQGPI TGEPNGAATG CSSAKSAKQP SQHPAASPGV GTYSSPTIGQ  240
PIGGPLVSTV GTSVNLPAPP HLAYGAVVPS APMNMGPVKY SMPHKSDHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1712801179RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200900.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438079.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438080.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438081.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438082.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438083.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-63DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B0PB960.0A0A0B0PB96_G
STRINGGLYMA07G28310.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-121MYB family protein